Encapsulating molecules inside nanotubes (called hybrid nanotubes in the following) is a common strategy to add new functionalities to the nanocontainer. The one-dimensional nature of single-walled carbon nanotubes (SWCNT) internal channels is exploited here to induce a molecular order and specific interactions which are dependent of the size of the nano container (figure). I present in this seminar the study of the relation between structural, vibrational and electronic properties of hybrid nanotubes encapsulating dyes. Dimethyl-quarterthiophene (4TCH3) encapsulated inside single-walled carbon nanotubes is studied by inelastic neutron scattering. The results reveal specific dynamics of the 4TCH3 modes characterized in particular by a large sensitivity in the low frequency domain of the methyl libration to the confinement. DFT based calculations consistently describe the observed phenomena and give insights on the structure of the hybrid nanotubes at low temperature where molecules preferentially interact with the nanotube wall. We evidence also by means of Raman spectroscopy and transmission electron microscopy that the supramolecular organizations of the confined oligothiophenes depend on the nanocontainer size. Charge transfer between the dyes and the nanocontainer is shown. A strong dependence on the infrared response of the hybrid nanotube due to confinement effect is finally investigated. The results are compared to experiments performed on nanotubes where dyes are π-stacked at the outer surface. Surprisingly, the confinement properties lead to an exaltation of the infrared absorption response in the carbon nanotubes from dye molecule interactions. Thanks to the comparison between the experimental investigations and DFT calculations, we elucidate the origin of the large enhancement of this infrared absorption.

Middle infrared response on a carbon nanotube is very weak because this homonuclear allotrope of carbon does not bear permanent dipoles. Nevertheless, a significant number of infrared phonons are predicted by the group theory. Encapsulating molecules inside nanotubes (called hybrid nanotubes in the following) is a common strategy to add new functionalities. The one-dimensional nature of single-walled carbon nanotubes (SWCNT) internal channels has been exploited here to induce a molecular order and specific interactions which are dependent of the size of the nano container.Here we report the discovery of a strong dependence on the infrared response of the hybrid nanotube due to confinement effect when dimethylquaterthiophenes are encapsulated inside SWCNTs. Results are compared to experiments performed on nanotubes where dyes are π-stacked at the outer surface. Surprisingly, the confinement properties lead to an exaltation of the infrared absorption response in the carbon nanotubes from dye molecule interactions. Thanks to the comparison between the experimental investigations and DFT calculations, we elucidate the origin of the large enhancement of this infrared absorption and demonstrate that interactions between conjugated oligomers and nanotubes can be probed.

Introduction to vibrational spectroscopies

Translation of messenger RNA (mRNA) leads to the production of proteins and is the last step of gene expression in cells. The dysregulation of translation can lead to all illnesses linked to the dysregulation of protein production, like cancer and neurodegenerative diseases.About ten years ago, a ribosomal density mapping strategy (Ribo-seq) was developed. The time is therefore ripe to apply theoretical physicsmethods to study translation. We model the movement of ribosomes on mRNA using the Totally Asymmetric Simple Exclusion Process (TASEP) which is an out of equilibrium one dimensional directed transport model. With Monte Carlo simulations and a mean field approach, we propose a way to calculate the speed of ribosomes from experimental data. Moreover, we provide preliminary results concerning the correlation between the speed of ribosomes and the occurrence rate of codons (RSCU).

Middle infrared response on a carbon nanotube is very weak because this homonuclear allotrope of carbon does not bear permanent dipoles. Nevertheless, a significant number of infrared phonons are predicted by the group theory. Encapsulating molecules inside nanotubes (called hybrid nanotubes in the following) is a common strategy to add new functionalities. The one-dimensional nature of single-walled carbon nanotubes (SWCNT) internal channels has been exploited here to induce a molecular order and specific interactions which are dependent of the size of the nano container (figure).Here we report the discovery of a strong dependence on the infrared response of the hybrid nanotube due to confinement effect when dimethylquaterthiophenes are encapsulated inside SWCNTs1. Results are compared to experiments performed on nanotubes where dyes are π-stacked at the outer surface. Surprisingly, the confinement properties lead to an exaltation of the infrared absorption response in the carbon nanotubes from dye molecule interactions. Thanks to the comparison between the experimental investigations and DFT calculations, we elucidate the origin of the large enhancement of this infrared absorption and demonstrate that interactions between conjugated oligomers and nanotubes can be probed.

Introduction à la spectroscopie EXAFS