Ref HAL: hal-01881168_v1
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Efficient bacterial chromosome segregation typically requires the coordinated action of a three-component, fueled by adenosine triphosphate machinery called the partition complex. We present a phenomenological model accounting for the dynamic activity of this system that is also relevant for the physics of catalytic particles in active environments. The model is obtained by coupling simple linear reaction-diffusion equations with a proteophoresis, or “volumetric” chemophoresis, force field that arises from protein-protein interactions and provides a physically viable mechanism for complex translocation. This minimal description captures most known experimental observations: dynamic oscillations of complex components, complex separation and subsequent symmetrical positioning. The predictions of our model are in phenomenological agreement with and provide substantial insight into recent experiments. From a non-linear physics view point, this system explores the active separation of matter at micrometric scales with a dynamical instability between static positioning and travelling wave regimes triggered by the dynamical spontaneous breaking of rotational symmetry.

Ref HAL: hal-01877609_v1
Ref Arxiv: 1804.06800
DOI: 10.1103/PhysRevE.98.012609
WoS: WOS:000440141300011
Ref. & Cit.: NASA ADS
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10 Citations
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Discontinuous shear-thickening in dense suspensions naturally emerges from the activation of frictional forces by shear flow in non-Brownian systems close to jamming. Yet, this physical picture is incomplete as most experiments study soft colloidal particles subject to thermal fluctuations. To characterise discontinuous shear-thickening in colloidal suspensions we use computer simulations to provide a complete description of the competition between athermal jamming, frictional forces, thermal motion, particle softness, and shear flow. We intentionally neglect hydrodynamics, electrostatics, lubrication, and inertia, but can nevertheless achieve quantitative agreement with experimental findings. In particular, shear-thickening corresponds to a crossover between frictionless and frictional jamming regimes which is controlled by thermal fluctuations and particle softness and occurs at a softness dependent P\'eclet number. We also explore the consequences of our findings for constant pressure experiments, and critically discuss the reported emergence of `S-shaped' flow curves. Our work provides the minimal ingredients to quantitatively interpret a large body of experimental work on discontinuous shear-thickening in colloidal suspensions.

Commentaires: 17 pages, 9 figures. Accepted for publication in Phys. Rev. E. Réf Journal: Phys. Rev. E 98, 012609 (2018)

Ref HAL: hal-01876145_v1
DOI: 10.1038/s41467-018-05329-8
WoS: WOS:000439687600009
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8 Citations
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Upon mechanical loading, granular materials yield and undergo plastic deformation. The nature of plastic deformation is essential for the development of the macroscopic constitutive models and the understanding of shear band formation. However, we still do not fully understand the microscopic nature of plastic deformation in disordered granular materials. Here we used synchrotron X-ray tomography technique to track the structural evolutions of three-dimensional granular materials under shear. We establish that highly distorted coplanar tetrahedra are the structural defects responsible for microscopic plasticity in disordered granular packings. The elementary plastic events occur through flip events which correspond to a neighbor switching process among these coplanar tetrahedra (or equivalently as the rotation motion of 4-ring disclinations). These events are discrete in space and possess specific orientations with the principal stress direction.

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A class of BPS solutions in N=2 supergravity describes multi-centered black holes. Generically, they are stable only in a chamber of the moduli space so that the BPS index, counting these solutions, jumps across walls of marginal stability. I'll show how the attractor flow conjecture allows to express this index in terms of "attractor degeneracies" counting black holes at theattractor point. Besides, using duality constraints from string theory, I predict the behavior of the generating function of these degeneracies under modular transformations, which connects it to the theory of mock modular forms.

Ref HAL: hal-01926457_v1
PMID 30446599
DOI: 10.15252/msb.20188516
WoS: 000451579500003
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14 Citations
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Chromosome and plasmid segregation in bacteria are mostly driven by ParABS systems. These DNA partitioning machineries rely on large nucleoprotein complexes assembled on centromere sites (parS). However, the mechanism of how a few parS-bound ParB proteins nucleate the formation of highly concentrated ParB clusters remains unclear despite several proposed physico-mathematical models. We discriminated between these different models by varying some key parameters in vivo using the plasmid F partition system. We found that ‘Nucleation & caging’ is the only coherent model recapitulating in vivo data. We also showed that the stochastic self-assembly of partition complexes (i) does not directly involve ParA, (ii) results in a dynamic structure of discrete size independent of ParB concentration, and (iii) is not perturbed by active transcription but is by protein complexes. We refined the ‘Nucleation & Caging’ model and successfully applied it to the chromosomally-encoded Par system of Vibrio cholerae, indicating that this stochastic self-assembly mechanism is widely conserved from plasmids to chromosomes.

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